GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▼ | nSNPs |
|---|---|---|---|---|
| MICB | Artery_Coronary | Blood Vessel | 0.676588364429052 | 10220 |
| SLC22A5 | Adipose_Subcutaneous | Adipose | 0.675397157636212 | 2104 |
| SBK1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.67535546926275 | 1287 |
| RP11-1348G14.4 | Esophagus_Gastroesophageal_Junction | Digestive | 0.671949810118003 | 1103 |
| KIAA0196 | Stomach | Digestive | 0.671829131680358 | 2281 |
| EIF3CL | Cells_Transformed_fibroblasts | Connective Tissue | 0.66993509079796 | 1559 |
| SPNS1 | Lung | Lung | 0.668701278595476 | 1572 |
| EIF3C | Cells_Transformed_fibroblasts | Connective Tissue | 0.668501772537141 | 1559 |
| SULT1A1 | Lung | Lung | 0.668432663291863 | 1572 |
| SULT1A2 | Testis | Male Reproductive | 0.667996874129007 | 1412 |
| EIF3CL | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.667574224092059 | 1582 |
| SULT1A2 | Vagina | Female Reproductive | 0.666295115168687 | 961 |
| ORM2 | Cells_Transformed_fibroblasts | Connective Tissue | 0.665301077659531 | 2928 |
| GSDMB | Colon_Transverse | Digestive | 0.66525484708988 | 1870 |
| ZNF300P1 | Brain_Cerebellum | Brain | 0.665254331517549 | 2413 |
| APEH | Breast_Mammary_Tissue | Breast | 0.66515711205509 | 1322 |
| RP11-1348G14.4 | Adrenal_Gland | Endocrine | 0.664867997420204 | 1121 |
| SLC26A6 | Adipose_Subcutaneous | Adipose | 0.664605432398707 | 1180 |
| ORM2 | Cells_Transformed_fibroblasts | Connective Tissue | 0.664217405028154 | 3003 |
| RP11-22P6.2 | Muscle_Skeletal | Skeletal Muscle | 0.66324808616827 | 1661 |
| JMJD1C | Esophagus_Muscularis | Digestive | 0.663238954569376 | 2330 |
| RP11-973H7.1 | Pancreas | Digestive | 0.663032692416286 | 2422 |
| NPIPB7 | Nerve_Tibial | Nervous | 0.662628228830063 | 1573 |
| RNASET2 | Thyroid | Endocrine | 0.662432819287045 | 4196 |
| NPIPB7 | Brain_Cerebellum | Brain | 0.661168287518751 | 1032 |
| NPIPB9 | Testis | Male Reproductive | 0.660309536905161 | 1412 |
| RNASET2 | Whole_Blood | Blood | 0.659724941592478 | 4154 |
| ZNF300P1 | Brain_Cerebellar_Hemisphere | Brain | 0.659597634960702 | 2360 |
| CBLL1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.658985483768822 | 2283 |
| CELSR3 | Lung | Lung | 0.65748718052792 | 1162 |
| TNFRSF6B | Cells_Transformed_fibroblasts | Connective Tissue | 0.657221261264469 | 3940 |
| MST1R | Heart_Left_Ventricle | Heart | 0.657205372506958 | 1332 |
| EIF3C | Esophagus_Mucosa | Digestive | 0.656945339631265 | 1388 |
| AC116366.6 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.656596951470867 | 1952 |
| SLC2A4RG | Muscle_Skeletal | Skeletal Muscle | 0.655373456190689 | 4061 |
| SBK1 | Lung | Lung | 0.655254350679741 | 1572 |
| JMJD1C | Esophagus_Muscularis | Digestive | 0.65489012823108 | 2479 |
| AL133458.1 | Brain_Cerebellar_Hemisphere | Brain | 0.654165054116228 | 3212 |
| MST1 | Esophagus_Mucosa | Digestive | 0.652065555101693 | 1384 |
| AAGAB | Thyroid | Endocrine | 0.650567041530162 | 2698 |
| CCR6 | Esophagus_Mucosa | Digestive | 0.649359519645171 | 3967 |
| SULT1A1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.64398362074588 | 1287 |
| RP1-167A14.2 | Whole_Blood | Blood | 0.643880859251917 | 4154 |
| EIF3C | Cells_EBV-transformed_lymphocytes | Blood | 0.642344863721013 | 1104 |
| SULT1A1 | Brain_Cortex | Brain | 0.640645739120207 | 1010 |
| IP6K2 | Testis | Male Reproductive | 0.640296549360821 | 683 |
| SULT1A2 | Brain_Putamen_basal_ganglia | Brain | 0.6400551048309 | 955 |
| ETS2 | Nerve_Tibial | Nervous | 0.637195815013095 | 3391 |
| NPIPB6 | Thyroid | Endocrine | 0.633369535221963 | 1585 |
| NFATC2IP | Colon_Transverse | Digestive | 0.63187322121231 | 1245 |