GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
SMAD3	Thyroid	Endocrine	0.996014786298891	2698
ETS2	Whole_Blood	Blood	0.987456636563683	3512
RP11-973H7.1	Esophagus_Muscularis	Digestive	0.984681126524351	2680
C1orf106	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.983708646426138	2983
AF064858.11	Whole_Blood	Blood	0.982048616227844	3512
AJ006998.2	Testis	Male Reproductive	0.981332161404909	2013
RP11-973H7.1	Lung	Lung	0.980919849282042	2813
C1orf106	Skin_Sun_Exposed_Lower_leg	Epithelial	0.978780788737119	3160
CAPN10	Heart_Atrial_Appendage	Heart	0.977375987738682	3658
RP11-973H7.1	Artery_Aorta	Blood Vessel	0.976986726867097	2636
C1orf106	Esophagus_Mucosa	Digestive	0.976241687864698	3022
RP11-973H7.1	Artery_Tibial	Blood Vessel	0.976072194765917	2841
RP11-973H7.1	Colon_Transverse	Digestive	0.97572214871267	2506
RP11-973H7.1	Cells_Transformed_fibroblasts	Connective Tissue	0.97557039994624	2802
CARD9	Whole_Blood	Blood	0.974720544153562	3317
CARD9	Whole_Blood	Blood	0.974720544153548	3327
FAM212A	Muscle_Skeletal	Skeletal Muscle	0.973039554366178	1494
AJ006998.2	Breast_Mammary_Tissue	Breast	0.971846381570175	2113
STMN3	Esophagus_Muscularis	Digestive	0.971226847663562	3814
AF064858.7	Whole_Blood	Blood	0.969368324972938	3512
RP11-129J12.2	Small_Intestine_Terminal_Ileum	Digestive	0.968863629627678	1904
RP11-973H7.1	Esophagus_Gastroesophageal_Junction	Digestive	0.966332776836148	2288
RP11-129J12.2	Colon_Sigmoid	Digestive	0.965663229582979	2067
OTUD3	Esophagus_Muscularis	Digestive	0.965551986927131	3081
OTUD3	Esophagus_Muscularis	Digestive	0.965525988115016	3099
RP11-129J12.2	Spleen	Immune Organ	0.962208270719626	1972
MST1	Thyroid	Endocrine	0.961513096740747	1428
CTD-3184A7.4	Whole_Blood	Blood	0.961502761633474	4029
ATG16L1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.960542971174492	2934
AJ006998.2	Nerve_Tibial	Nervous	0.959800556129519	2273
AF064858.8	Whole_Blood	Blood	0.959041353465913	3512
AIRE	Skin_Sun_Exposed_Lower_leg	Epithelial	0.957584780585233	3458
SULT1A2	Whole_Blood	Blood	0.95480604180299	1629
SULT1A2	Nerve_Tibial	Nervous	0.954449725614078	1573
ZPBP2	Testis	Male Reproductive	0.954435809783487	1762
ATG16L1	Adipose_Subcutaneous	Adipose	0.953255400611196	2946
RP11-973H7.1	Esophagus_Mucosa	Digestive	0.952938751773676	2714
RPL37	Nerve_Tibial	Nervous	0.952446487132742	3111
RPL37	Nerve_Tibial	Nervous	0.952392141575525	3188
ATG16L1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.95046200982443	2740
ATG16L1	Brain_Cerebellum	Brain	0.948244824777047	2341
CDC37P1	Thyroid	Endocrine	0.947645337399278	1585
GPSM1	Thyroid	Endocrine	0.946212497510959	3225
GPSM1	Thyroid	Endocrine	0.946066250329341	3248
SULT1A2	Esophagus_Muscularis	Digestive	0.945534697423919	1333
RP11-973H7.1	Colon_Sigmoid	Digestive	0.944870856985927	2375
SLC26A6	Muscle_Skeletal	Skeletal Muscle	0.943754728245921	1229
SULT1A2	Adipose_Subcutaneous	Adipose	0.94301700052023	1605
NPIPB6	Testis	Male Reproductive	0.942570104055778	1412
PDLIM4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.941752866578175	2115