GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▼ | nSNPs |
|---|---|---|---|---|
| SH2B1 | Heart_Atrial_Appendage | Heart | 0.706223238438975 | 1197 |
| OTUD3 | Heart_Left_Ventricle | Heart | 0.706118414968657 | 3002 |
| CCDC116 | Vagina | Female Reproductive | 0.705859436712405 | 1156 |
| OTUD3 | Heart_Left_Ventricle | Heart | 0.705232649294731 | 3023 |
| NUPR1 | Testis | Male Reproductive | 0.703337430370042 | 1412 |
| HLA-DQB2 | Testis | Male Reproductive | 0.702900879268067 | 19344 |
| INPP5E | Colon_Sigmoid | Digestive | 0.702866908838708 | 2494 |
| SULT1A1 | Stomach | Digestive | 0.702717159640636 | 1259 |
| ARFRP1 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.702503998399279 | 3965 |
| ZNF300P1 | Colon_Transverse | Digestive | 0.70247296262347 | 2815 |
| INPP5E | Colon_Sigmoid | Digestive | 0.700689518578972 | 2553 |
| RP11-1348G14.4 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.700230962264473 | 1287 |
| CCDC116 | Stomach | Digestive | 0.699661548721642 | 1475 |
| SLC22A4 | Artery_Aorta | Blood Vessel | 0.699577416345871 | 1903 |
| SLC22A5 | Lung | Lung | 0.699307077845604 | 2057 |
| ZNF300P1 | Artery_Coronary | Blood Vessel | 0.699022324662525 | 2612 |
| SLC26A6 | Cells_EBV-transformed_lymphocytes | Blood | 0.698653616411114 | 919 |
| RP13-152O15.5 | Breast_Mammary_Tissue | Breast | 0.697761856793802 | 3657 |
| CCDC116 | Spleen | Immune Organ | 0.6974687208978 | 1147 |
| NPIPB9 | Esophagus_Muscularis | Digestive | 0.696329395015751 | 1333 |
| SLC9A4 | Esophagus_Mucosa | Digestive | 0.69630211072071 | 2924 |
| PARK7 | Thyroid | Endocrine | 0.696161336532632 | 2760 |
| PARK7 | Heart_Left_Ventricle | Heart | 0.694886354815201 | 2583 |
| STAC2 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.693675652449122 | 2060 |
| EIF3CL | Artery_Aorta | Blood Vessel | 0.692861666195353 | 1275 |
| TUFM | Esophagus_Muscularis | Digestive | 0.6926401365378 | 1333 |
| IL18R1 | Muscle_Skeletal | Skeletal Muscle | 0.692017114258912 | 3092 |
| IL18R1 | Muscle_Skeletal | Skeletal Muscle | 0.690804738054203 | 2895 |
| GPX1 | Esophagus_Muscularis | Digestive | 0.689436648468902 | 1348 |
| SLC22A5 | Cells_EBV-transformed_lymphocytes | Blood | 0.688603069233424 | 1792 |
| TUFM | Colon_Sigmoid | Digestive | 0.687688806332597 | 1086 |
| EIF3CL | Esophagus_Muscularis | Digestive | 0.687498400568878 | 1333 |
| EIF3C | Whole_Blood | Blood | 0.686142225870847 | 1629 |
| TNFSF15 | Artery_Aorta | Blood Vessel | 0.685442070210463 | 2788 |
| TNFSF15 | Artery_Aorta | Blood Vessel | 0.685354319818709 | 2818 |
| P4HA2 | Testis | Male Reproductive | 0.684626539027375 | 1874 |
| SBK1 | Stomach | Digestive | 0.68370704256316 | 1259 |
| AJ006998.2 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.683230142029979 | 2327 |
| RP11-1348G14.4 | Colon_Sigmoid | Digestive | 0.683113022070901 | 1086 |
| SH2B1 | Adrenal_Gland | Endocrine | 0.68200628466899 | 1121 |
| RP11-297A16.2 | Cells_EBV-transformed_lymphocytes | Blood | 0.680298440007943 | 1718 |
| OTUD3 | Adrenal_Gland | Endocrine | 0.679792669515451 | 2752 |
| OTUD3 | Adrenal_Gland | Endocrine | 0.679749436029527 | 2751 |
| CHRNG | Muscle_Skeletal | Skeletal Muscle | 0.679559828649535 | 2274 |
| CCDC116 | Adrenal_Gland | Endocrine | 0.679166151687785 | 1278 |
| SLC9A4 | Esophagus_Mucosa | Digestive | 0.678630613735438 | 2743 |
| PARK7 | Lung | Lung | 0.678036512171628 | 2764 |
| IL18R1 | Heart_Left_Ventricle | Heart | 0.677993061071668 | 2860 |
| EIF3CL | Adrenal_Gland | Endocrine | 0.677838292144575 | 1121 |
| IL18R1 | Heart_Left_Ventricle | Heart | 0.677802163097779 | 2686 |