GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
GPSM1	Muscle_Skeletal	Skeletal Muscle	0.737308177709221	3373
GPSM1	Muscle_Skeletal	Skeletal Muscle	0.737118456459033	3413
RP11-1348G14.6	Nerve_Tibial	Nervous	0.736380879744252	1573
PLA2G2A	Thyroid	Endocrine	0.736300005167485	3230
PLA2G2A	Thyroid	Endocrine	0.736195857182426	3253
ZNF300P1	Breast_Mammary_Tissue	Breast	0.736162574243971	2869
OTUD3	Colon_Sigmoid	Digestive	0.73513321678421	2744
ZNF300P1	Stomach	Digestive	0.733991312619173	2870
NPIPB6	Colon_Transverse	Digestive	0.733842809778044	1245
NFATC2IP	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.732084683868488	1287
RNASET2	Lung	Lung	0.731826612567359	4049
INPP5E	Brain_Hippocampus	Brain	0.73168924421504	2218
RP11-1348G14.6	Skin_Sun_Exposed_Lower_leg	Epithelial	0.731634788416047	1582
INPP5E	Brain_Hippocampus	Brain	0.731251079692726	2278
NFATC2IP	Testis	Male Reproductive	0.731164391122702	1412
NPIPB7	Brain_Frontal_Cortex_BA9	Brain	0.730721273575757	988
CDC37P1	Adipose_Subcutaneous	Adipose	0.730411211398563	1605
CREM	Cells_EBV-transformed_lymphocytes	Blood	0.726674866486032	1718
ATP2A1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.726674023554689	1582
MAPKAPK3	Thyroid	Endocrine	0.726025630646915	844
GPX1	Heart_Atrial_Appendage	Heart	0.72590366387557	1310
IP6K2	Artery_Aorta	Blood Vessel	0.725496510737344	1043
CAPN10	Artery_Tibial	Blood Vessel	0.724980930654322	4028
ZNF300P1	Muscle_Skeletal	Skeletal Muscle	0.724702140938963	3233
GPX4	Prostate	Male Reproductive	0.724653593762906	2939
RP11-1348G14.4	Brain_Cerebellar_Hemisphere	Brain	0.723375395869393	993
RP11-387H17.4	Adipose_Visceral_Omentum	Adipose	0.723199790523347	1905
EIF3CL	Whole_Blood	Blood	0.722972338661046	1629
EIF3CL	Pancreas	Digestive	0.721493779468233	1168
SDCCAG3	Artery_Tibial	Blood Vessel	0.721474899875525	3234
CXCL14	Spleen	Immune Organ	0.721321109196706	1294
SDCCAG3	Artery_Tibial	Blood Vessel	0.721312010680675	3213
APOBR	Lung	Lung	0.720830712893924	1572
RP11-129J12.1	Colon_Sigmoid	Digestive	0.719911533451701	2067
AP001189.4	Colon_Transverse	Digestive	0.719722935124328	2776
CDC37P1	Colon_Sigmoid	Digestive	0.719325486888518	1086
SULT1A1	Muscle_Skeletal	Skeletal Muscle	0.718190575871828	1661
TUFM	Artery_Coronary	Blood Vessel	0.717586837322118	1108
SULT1A1	Brain_Cerebellum	Brain	0.715695656417293	1032
QRICH1	Pituitary	Endocrine	0.71547691994319	973
TRIB1	Thyroid	Endocrine	0.713883821311391	2532
NPIPB7	Brain_Anterior_cingulate_cortex_BA24	Brain	0.712930957643124	931
NPIPB7	Adrenal_Gland	Endocrine	0.712786153373537	1121
RP11-316M21.7	Nerve_Tibial	Nervous	0.711934574662381	2077
MST1	Brain_Hypothalamus	Brain	0.711775008052721	1168
ATXN2L	Adipose_Subcutaneous	Adipose	0.711333221272404	1605
AC005329.7	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.708385529466657	3723
NPIPB7	Artery_Aorta	Blood Vessel	0.707787682931335	1275
RP11-1348G14.4	Spleen	Immune Organ	0.707272401389422	999
SLC22A5	Nerve_Tibial	Nervous	0.706409617608509	2075