GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
IL18R1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.769435846464285	2830
RP11-431K24.1	Artery_Tibial	Blood Vessel	0.768745757493062	2794
RP11-1348G14.4	Esophagus_Muscularis	Digestive	0.768679252943415	1333
RHOA-IT1	Colon_Transverse	Digestive	0.768626137001233	1292
EIF3CL	Heart_Left_Ventricle	Heart	0.768516862254855	1264
NPIPB7	Artery_Tibial	Blood Vessel	0.767974607452678	1593
SBK1	Artery_Tibial	Blood Vessel	0.767371649379215	1593
CDC37P1	Adipose_Visceral_Omentum	Adipose	0.767206190089502	1393
CDC37P1	Lung	Lung	0.767145899198726	1572
CDC37P1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.767031484192482	1582
IRGM	Whole_Blood	Blood	0.766568727281409	3182
RP11-1348G14.4	Artery_Tibial	Blood Vessel	0.766294213996525	1593
RP11-129J12.1	Colon_Transverse	Digestive	0.765546263402639	2216
ZNF300P1	Nerve_Tibial	Nervous	0.765208787909352	3045
IRF1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.764995174566611	2115
MROH3P	Artery_Aorta	Blood Vessel	0.764117393200593	2921
ZNF300P1	Esophagus_Gastroesophageal_Junction	Digestive	0.763515190341107	2577
RNASET2	Pancreas	Digestive	0.762746186419719	3581
CDC37P1	Cells_EBV-transformed_lymphocytes	Blood	0.762247270461923	1104
CAPN10	Breast_Mammary_Tissue	Breast	0.761713125719041	3742
RP11-1348G14.4	Artery_Aorta	Blood Vessel	0.761651503900523	1275
GPX1	Brain_Cerebellum	Brain	0.761428360520584	1206
CDC37P1	Artery_Tibial	Blood Vessel	0.760003912023624	1593
ZNF300	Testis	Male Reproductive	0.75986748440367	2800
RP11-1348G14.4	Adipose_Subcutaneous	Adipose	0.759640283386705	1605
SULT1A2	Adrenal_Gland	Endocrine	0.759113877901212	1121
CDC37P1	Vagina	Female Reproductive	0.758777431610079	961
SULT1A1	Prostate	Male Reproductive	0.758619698000542	977
PDLIM4	Testis	Male Reproductive	0.756106525235384	1874
ICAM5	Whole_Blood	Blood	0.756031276173871	2868
CCDC116	Pancreas	Digestive	0.755795713998057	1436
RP11-1348G14.4	Prostate	Male Reproductive	0.755635546940744	977
ZNF300P1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.754281019201566	3111
PTRF	Skin_Sun_Exposed_Lower_leg	Epithelial	0.7530825907352	1585
CDC37P1	Small_Intestine_Terminal_Ileum	Digestive	0.752863171846042	949
CCDC116	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.752587747026949	1563
RP11-973H7.1	Stomach	Digestive	0.75200880765411	2542
ZNF300P1	Artery_Tibial	Blood Vessel	0.751661451733489	3116
ZNF300P1	Artery_Aorta	Blood Vessel	0.750568371904364	2879
RP11-1348G14.6	Esophagus_Muscularis	Digestive	0.748514112641685	1333
TUFM	Brain_Hippocampus	Brain	0.747990148867159	959
RP11-1348G14.4	Esophagus_Mucosa	Digestive	0.747314145701238	1388
ITGB2-AS1	Heart_Left_Ventricle	Heart	0.743935739771053	2322
EIF3C	Heart_Left_Ventricle	Heart	0.743653926485108	1264
ZNF300	Artery_Tibial	Blood Vessel	0.743568160812563	3116
GSDMA	Cells_EBV-transformed_lymphocytes	Blood	0.742746909700464	1679
GPX4	Pancreas	Digestive	0.740591149513293	3445
SBK1	Colon_Transverse	Digestive	0.740138459472122	1245
NFATC2IP	Cells_Transformed_fibroblasts	Connective Tissue	0.738441627312418	1559
OTUD3	Colon_Sigmoid	Digestive	0.737341793283019	2723