GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
DAG1	Esophagus_Muscularis	Digestive	0.807579503528008	1348
ZNF300P1	Adipose_Visceral_Omentum	Adipose	0.807224633243597	2848
CDC37P1	Pancreas	Digestive	0.806321337788499	1168
AJ006998.2	Muscle_Skeletal	Skeletal Muscle	0.804530173033824	2420
MST1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.804293070532119	1437
NPIPB7	Testis	Male Reproductive	0.80323230200382	1412
TUFM	Artery_Aorta	Blood Vessel	0.801855535759703	1275
AL133458.1	Whole_Blood	Blood	0.798799128865312	4154
ZNF300P1	Lung	Lung	0.798591266780213	3062
IL18R1	Lung	Lung	0.796615393534288	2994
IL18R1	Lung	Lung	0.796395090928203	2803
RP11-435I10.5	Brain_Cerebellum	Brain	0.795334275295553	1032
CAPN10	Stomach	Digestive	0.794257399141825	3704
PMPCA	Liver	Liver	0.793326439051143	2370
PMPCA	Liver	Liver	0.792038858540086	2308
IP6K2	Adipose_Subcutaneous	Adipose	0.791961481834597	771
FGFR1OP	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.79178345902034	3760
CDC37P1	Ovary	Female Reproductive	0.791691436993658	988
TMED1	Whole_Blood	Blood	0.790075252920561	2868
RP11-1348G14.6	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.789212790628126	1287
RP11-1348G14.4	Lung	Lung	0.788880984289435	1572
ZNF300	Esophagus_Muscularis	Digestive	0.787987202482847	2959
NPIPB7	Adipose_Subcutaneous	Adipose	0.78679492345835	1605
ORMDL3	Breast_Mammary_Tissue	Breast	0.785969098658265	1912
GRB7	Thyroid	Endocrine	0.785937963777422	2073
RN7SL47P	Lung	Lung	0.785257413162415	2854
IL18RAP	Whole_Blood	Blood	0.784620112920594	3070
IL18RAP	Whole_Blood	Blood	0.784490454886813	2880
SULT1A1	Pancreas	Digestive	0.784365917119685	1168
CCDC36	Testis	Male Reproductive	0.783640979414563	898
RP11-1348G14.4	Breast_Mammary_Tissue	Breast	0.782964552830085	1297
RP11-22P6.3	Muscle_Skeletal	Skeletal Muscle	0.782894942413419	1661
TUFM	Brain_Nucleus_accumbens_basal_ganglia	Brain	0.782335279423874	1030
ZNF300P1	Liver	Liver	0.781703662500868	2391
ZNF300P1	Colon_Sigmoid	Digestive	0.78039052395093	2609
TUFM	Testis	Male Reproductive	0.780068036340554	1412
TUFM	Brain_Putamen_basal_ganglia	Brain	0.779419617501208	955
SH2B1	Esophagus_Muscularis	Digestive	0.779316167323819	1333
SH2B1	Nerve_Tibial	Nervous	0.77867423047761	1573
SH2B1	Breast_Mammary_Tissue	Breast	0.778288638667833	1297
SH2B1	Heart_Left_Ventricle	Heart	0.776354288469992	1264
ZNF300P1	Esophagus_Mucosa	Digestive	0.776030576252209	2990
NPIPB7	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.773190616991655	1287
SULT1A1	Breast_Mammary_Tissue	Breast	0.77273536496547	1297
RP11-1348G14.5	Breast_Mammary_Tissue	Breast	0.771646973483227	1297
RP11-435I10.5	Ovary	Female Reproductive	0.770503523981693	988
MST1	Nerve_Tibial	Nervous	0.769803093135282	1417
SH2B1	Lung	Lung	0.769734972435177	1572
SH2B1	Esophagus_Mucosa	Digestive	0.769648582150712	1388
IL18R1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.769615842412564	3006