GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
IL27	Liver	Liver	0.894663385414893	1024
CCDC116	Artery_Aorta	Blood Vessel	0.893486622017611	1507
NKX2-3	Thyroid	Endocrine	0.892809750349415	2441
CDC37P1	Spleen	Immune Organ	0.892057764491431	999
CAPN10	Adipose_Visceral_Omentum	Adipose	0.890442588292097	3735
GPX4	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.88950629152511	3723
SLC22A5	Colon_Transverse	Digestive	0.885641731849402	1870
CCDC116	Artery_Coronary	Blood Vessel	0.883301257437554	1308
RP11-435I10.5	Skin_Sun_Exposed_Lower_leg	Epithelial	0.881697254179812	1582
CCDC116	Esophagus_Muscularis	Digestive	0.881587617197068	1572
PSMD3	Cells_Transformed_fibroblasts	Connective Tissue	0.880122526863037	2008
RP11-973H7.1	Thyroid	Endocrine	0.877210215436063	2822
CCDC116	Artery_Tibial	Blood Vessel	0.87576722685192	1699
UBE2L3	Muscle_Skeletal	Skeletal Muscle	0.875213051725914	1799
GPX1	Brain_Cerebellar_Hemisphere	Brain	0.875120112198065	1195
CCDC116	Adipose_Visceral_Omentum	Adipose	0.874937891512392	1495
CCDC116	Cells_Transformed_fibroblasts	Connective Tissue	0.874426354804824	1670
CCDC116	Adipose_Subcutaneous	Adipose	0.874138012589508	1738
RTEL1	Adipose_Subcutaneous	Adipose	0.873046789196641	3966
CDC37P1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.871936335363713	1287
CCDC116	Skin_Sun_Exposed_Lower_leg	Epithelial	0.8715925004929	1741
C19orf25	Esophagus_Mucosa	Digestive	0.87031494323349	3841
RP11-1348G14.6	Thyroid	Endocrine	0.870240821909079	1585
SULT1A2	Muscle_Skeletal	Skeletal Muscle	0.868514741380422	1661
SLC26A6	Lung	Lung	0.8675182380104	1162
APEH	Adipose_Subcutaneous	Adipose	0.867378990495307	1433
RP11-435I10.5	Artery_Tibial	Blood Vessel	0.866699341067304	1593
ATG16L1	Esophagus_Mucosa	Digestive	0.864000323164857	2800
RP11-1348G14.4	Muscle_Skeletal	Skeletal Muscle	0.863739875823329	1661
SULT1A2	Artery_Coronary	Blood Vessel	0.862754799150063	1108
SULT1A2	Heart_Left_Ventricle	Heart	0.861766031235791	1264
CDC37P1	Heart_Atrial_Appendage	Heart	0.860915373222179	1197
CCDC116	Brain_Cerebellum	Brain	0.86089943818806	1199
CDC37P1	Stomach	Digestive	0.860432356563448	1259
MROH3P	Artery_Coronary	Blood Vessel	0.859780043140657	2611
PMPCA	Thyroid	Endocrine	0.859079603351464	3225
PMPCA	Thyroid	Endocrine	0.859078361267125	3248
CCDC116	Lung	Lung	0.859072266674537	1679
AJ006998.2	Adipose_Visceral_Omentum	Adipose	0.857821597437706	2117
AP001172.2	Thyroid	Endocrine	0.856562576910074	1453
GSDMB	Small_Intestine_Terminal_Ileum	Digestive	0.854835132452679	1400
CCDC116	Esophagus_Gastroesophageal_Junction	Digestive	0.853822176901593	1263
CCDC116	Nerve_Tibial	Nervous	0.853701692521109	1667
SULT1A1	Esophagus_Mucosa	Digestive	0.851306333172362	1388
APEH	Nerve_Tibial	Nervous	0.851169963111883	1417
CCDC116	Heart_Left_Ventricle	Heart	0.850418864960086	1521
NPIPB6	Skin_Sun_Exposed_Lower_leg	Epithelial	0.848794234078226	1582
SULT1A2	Stomach	Digestive	0.848296610699344	1259
ZNF618	Skin_Sun_Exposed_Lower_leg	Epithelial	0.84818885431696	1624
SNORA21	Heart_Left_Ventricle	Heart	0.848097760922887	1069