GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
SULT1A2	Artery_Aorta	Blood Vessel	0.941510538296381	1275
NPIPB7	Skin_Sun_Exposed_Lower_leg	Epithelial	0.941404232969683	1582
CARD9	Cells_Transformed_fibroblasts	Connective Tissue	0.940504826477948	3212
CARD9	Cells_Transformed_fibroblasts	Connective Tissue	0.940483578854621	3242
RP11-129J12.2	Colon_Transverse	Digestive	0.940126208373274	2216
ATG16L1	Testis	Male Reproductive	0.940092000032781	2580
STAT3	Muscle_Skeletal	Skeletal Muscle	0.939920617526645	1649
RP11-435I10.5	Testis	Male Reproductive	0.93972621079047	1412
SLC22A5	Breast_Mammary_Tissue	Breast	0.939103825418163	1938
SULT1A2	Artery_Tibial	Blood Vessel	0.937325346102949	1593
PARK7	Whole_Blood	Blood	0.936827121902505	2844
CDC37P1	Artery_Coronary	Blood Vessel	0.93303612186197	1108
APEH	Esophagus_Mucosa	Digestive	0.932173088158953	1384
UBE2L3	Whole_Blood	Blood	0.931709250366564	1766
IL5	Muscle_Skeletal	Skeletal Muscle	0.930007107403804	2168
SULT1A2	Breast_Mammary_Tissue	Breast	0.929586954056795	1297
AJ006998.2	Adipose_Subcutaneous	Adipose	0.928929281033577	2297
ATG16L1	Nerve_Tibial	Nervous	0.927894170404804	2877
SULT1A2	Skin_Sun_Exposed_Lower_leg	Epithelial	0.925733877518201	1582
CCDC116	Esophagus_Mucosa	Digestive	0.922599948827391	1636
APEH	Cells_Transformed_fibroblasts	Connective Tissue	0.920747219855813	1403
NUPR1	Artery_Tibial	Blood Vessel	0.919918310610297	1593
SULT1A2	Adipose_Visceral_Omentum	Adipose	0.919166607814734	1393
RP11-129J12.1	Spleen	Immune Organ	0.918293463442542	1972
MST1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.918132522127379	1331
TRPM2	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.917748788719363	3158
IP6K2	Artery_Tibial	Blood Vessel	0.917584942284176	1167
NICN1	Esophagus_Muscularis	Digestive	0.916556369806848	1348
ATG16L1	Lung	Lung	0.916038922971675	2876
SULT1A2	Esophagus_Mucosa	Digestive	0.915791555389193	1388
RP11-1348G14.4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.915053779803222	1582
DOCK3	Skin_Sun_Exposed_Lower_leg	Epithelial	0.913868881422502	770
RP11-973H7.1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.913160272227422	2862
SLC22A5	Spleen	Immune Organ	0.910592720080083	1584
NPIPB7	Whole_Blood	Blood	0.908706323358786	1629
CDC37P1	Testis	Male Reproductive	0.908456168490468	1412
CDC37P1	Colon_Transverse	Digestive	0.906839710571331	1245
CARD9	Lung	Lung	0.906660951482629	3213
CARD9	Lung	Lung	0.906471186159853	3207
CCDC116	Colon_Sigmoid	Digestive	0.905017184755205	1325
CCDC116	Thyroid	Endocrine	0.902070515568264	1689
CDC37P1	Artery_Aorta	Blood Vessel	0.901327335321254	1275
RP11-435I10.5	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.901323921165485	1287
RP11-129J12.1	Small_Intestine_Terminal_Ileum	Digestive	0.901315715958048	1904
KB-1440D3.14	Nerve_Tibial	Nervous	0.899676672212178	1667
ATG16L1	Esophagus_Muscularis	Digestive	0.898506812787058	2784
CCDC116	Breast_Mammary_Tissue	Breast	0.897510684664212	1448
AC007278.2	Whole_Blood	Blood	0.896840248720665	3070
AC007278.2	Whole_Blood	Blood	0.89676523932064	2880
CDC37P1	Cells_Transformed_fibroblasts	Connective Tissue	0.894814880702798	1559