GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▼ | nSNPs |
|---|---|---|---|---|
| HLA-DQA2 | Liver | Liver | 0.517528542115524 | 17875 |
| STMN3 | Pancreas | Digestive | 0.517168209342123 | 3528 |
| TCAP | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.517086098886961 | 1911 |
| SBNO2 | Whole_Blood | Blood | 0.517068275746811 | 4159 |
| CCDC116 | Brain_Cerebellar_Hemisphere | Brain | 0.515990301118308 | 1157 |
| USP4 | Cells_EBV-transformed_lymphocytes | Blood | 0.515612369311578 | 1241 |
| NPIPB7 | Brain_Nucleus_accumbens_basal_ganglia | Brain | 0.515380295963777 | 1030 |
| IL13 | Lung | Lung | 0.514635820812482 | 2057 |
| EIF3C | Pancreas | Digestive | 0.51397835361102 | 1168 |
| GLT6D1 | Testis | Male Reproductive | 0.513787718562833 | 2054 |
| AC116366.6 | Lung | Lung | 0.513071535756764 | 2057 |
| SMAD3 | Whole_Blood | Blood | 0.512266024549946 | 2758 |
| NRARP | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.510749053119163 | 1779 |
| KIAA1841 | Stomach | Digestive | 0.509850855538201 | 1777 |
| RP11-1348G14.6 | Uterus | Female Reproductive | 0.509738486189446 | 919 |
| IP6K2 | Artery_Tibial | Blood Vessel | 0.509406907196888 | 765 |
| NPIPB7 | Artery_Coronary | Blood Vessel | 0.509317939716437 | 1108 |
| RP11-1348G14.6 | Cells_EBV-transformed_lymphocytes | Blood | 0.508924691497803 | 1104 |
| CCDC101 | Esophagus_Muscularis | Digestive | 0.508507840289751 | 1333 |
| LINC00854 | Colon_Transverse | Digestive | 0.508362150855483 | 913 |
| EIF3CL | Heart_Atrial_Appendage | Heart | 0.508136469181697 | 1197 |
| SULT1A2 | Heart_Atrial_Appendage | Heart | 0.507972516192402 | 1197 |
| HLA-DQA2 | Vagina | Female Reproductive | 0.507759682619 | 17366 |
| SH2B1 | Prostate | Male Reproductive | 0.507031726355687 | 977 |
| STMN3 | Thyroid | Endocrine | 0.506916994339498 | 3956 |
| SH2B1 | Artery_Tibial | Blood Vessel | 0.506697039620631 | 1593 |
| TMCO4 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.505994845297276 | 3035 |
| SLC22A4 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.505405609862018 | 2115 |
| SBK1 | Pancreas | Digestive | 0.505201577701059 | 1168 |
| MST1 | Adipose_Subcutaneous | Adipose | 0.504802383804089 | 1433 |
| NRARP | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.50468633966297 | 2164 |
| TMCO4 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.503906444753401 | 3053 |
| RP11-1348G14.4 | Brain_Frontal_Cortex_BA9 | Brain | 0.503483839681093 | 988 |
| ABCA2 | Ovary | Female Reproductive | 0.50332698808257 | 1970 |
| RP11-1348G14.6 | Brain_Hippocampus | Brain | 0.502099553083367 | 959 |
| TUFM | Stomach | Digestive | 0.501442237471373 | 1259 |
| PIAS1 | Thyroid | Endocrine | 0.500444457097339 | 1226 |
| GPC1 | Adipose_Subcutaneous | Adipose | 0.500135251216684 | 4047 |