GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▼ | nSNPs |
|---|---|---|---|---|
| RHOA | Artery_Tibial | Blood Vessel | 0.548595215688056 | 747 |
| PTPN2 | Whole_Blood | Blood | 0.548577408013884 | 2919 |
| SULT1A2 | Brain_Nucleus_accumbens_basal_ganglia | Brain | 0.548351443247106 | 1030 |
| TNFRSF6B | Artery_Tibial | Blood Vessel | 0.54828861152527 | 3962 |
| WDR6 | Brain_Cortex | Brain | 0.548180748471058 | 837 |
| ERBB2 | Heart_Atrial_Appendage | Heart | 0.548090577823181 | 1818 |
| TUFM | Adipose_Visceral_Omentum | Adipose | 0.548032940453878 | 1393 |
| TUFM | Adipose_Subcutaneous | Adipose | 0.546874938845105 | 1605 |
| TMEM184B | Colon_Transverse | Digestive | 0.546789454431932 | 1574 |
| LIME1 | Testis | Male Reproductive | 0.542568987265833 | 3583 |
| HLA-DQA2 | Colon_Sigmoid | Digestive | 0.541651024499149 | 18479 |
| RP11-1348G14.6 | Breast_Mammary_Tissue | Breast | 0.541511436015895 | 1297 |
| SULT1A2 | Pancreas | Digestive | 0.540057253985669 | 1168 |
| GPX4 | Artery_Tibial | Blood Vessel | 0.538625905472428 | 4035 |
| DAG1 | Cells_Transformed_fibroblasts | Connective Tissue | 0.537965730638067 | 1403 |
| SULT1A2 | Brain_Anterior_cingulate_cortex_BA24 | Brain | 0.53783014589536 | 931 |
| RP11-1348G14.6 | Artery_Aorta | Blood Vessel | 0.537494071654168 | 1275 |
| NPIPB6 | Brain_Cerebellar_Hemisphere | Brain | 0.536416675649753 | 993 |
| RP11-64C12.6 | Adipose_Subcutaneous | Adipose | 0.535353299646678 | 2649 |
| GPR25 | Whole_Blood | Blood | 0.53526355565954 | 3221 |
| SULT1A1 | Esophagus_Muscularis | Digestive | 0.535210403362481 | 1333 |
| PKD2L1 | Artery_Aorta | Blood Vessel | 0.534903785307708 | 1689 |
| NPIPB7 | Brain_Cortex | Brain | 0.534835982654369 | 1010 |
| SULT1A1 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.533961941888976 | 1582 |
| CCDC101 | Artery_Tibial | Blood Vessel | 0.533430396769453 | 1593 |
| ORM1 | Artery_Aorta | Blood Vessel | 0.532359618763777 | 2726 |
| ORM1 | Artery_Aorta | Blood Vessel | 0.530822440563182 | 2818 |
| ARHGAP30 | Colon_Transverse | Digestive | 0.528498337540566 | 2549 |
| RP11-973H7.1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.527592315205731 | 2654 |
| RNF123 | Brain_Frontal_Cortex_BA9 | Brain | 0.527516934738137 | 1197 |
| SULT1A1 | Brain_Caudate_basal_ganglia | Brain | 0.527397730961766 | 1032 |
| CTC-276P9.3 | Testis | Male Reproductive | 0.5267871272382 | 1531 |
| DLD | Artery_Aorta | Blood Vessel | 0.526272695267714 | 2305 |
| SULT1A1 | Brain_Frontal_Cortex_BA9 | Brain | 0.52479079624199 | 988 |
| INPP5E | Pituitary | Endocrine | 0.523810457618483 | 2275 |
| EIF3C | Adipose_Subcutaneous | Adipose | 0.523655012170803 | 1605 |
| INPP5E | Pituitary | Endocrine | 0.523578144412965 | 2330 |
| HLA-DQA2 | Small_Intestine_Terminal_Ileum | Digestive | 0.523493942604044 | 17209 |
| C19orf66 | Thyroid | Endocrine | 0.522920294354969 | 2750 |
| SULT1A2 | Ovary | Female Reproductive | 0.521673415843112 | 988 |
| KIAA0196 | Cells_Transformed_fibroblasts | Connective Tissue | 0.521480790866648 | 2481 |
| PDLIM4 | Brain_Cortex | Brain | 0.521326709705638 | 1723 |
| ATP2A1 | Muscle_Skeletal | Skeletal Muscle | 0.520624195579602 | 1661 |
| FGFR1OP | Esophagus_Mucosa | Digestive | 0.520261985429218 | 3967 |
| RP11-1348G14.4 | Brain_Hypothalamus | Brain | 0.520120966512992 | 985 |
| HLA-DQA2 | Uterus | Female Reproductive | 0.519604856840145 | 16732 |
| GLT6D1 | Testis | Male Reproductive | 0.518886176835085 | 1762 |
| IRF1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.518844842105591 | 1952 |
| GTF3C1 | Whole_Blood | Blood | 0.518099607051541 | 949 |
| IP6K1 | Cells_EBV-transformed_lymphocytes | Blood | 0.5177287969655 | 1241 |