GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▼	nSNPs
NPIPB7	Brain_Cerebellar_Hemisphere	Brain	0.60633513732704	993
SLC25A48	Brain_Cerebellar_Hemisphere	Brain	0.60403164752056	1138
RNF123	Heart_Atrial_Appendage	Heart	0.603178245075752	1310
PARD3-AS1	Artery_Aorta	Blood Vessel	0.602972463560797	1875
RNASET2	Stomach	Digestive	0.601119967873081	3715
TMCO4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.601098285917186	3296
PPP1R1B	Heart_Atrial_Appendage	Heart	0.600986880082395	1818
RP11-435I10.5	Pituitary	Endocrine	0.600863998207289	981
TUFM	Cells_EBV-transformed_lymphocytes	Blood	0.600524343971742	1104
TMCO4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.60044797749892	3315
PDE4A	Cells_Transformed_fibroblasts	Connective Tissue	0.600270433917412	2739
EIF3CL	Artery_Tibial	Blood Vessel	0.599467745098822	1593
LEAP2	Artery_Aorta	Blood Vessel	0.598769363995915	1903
CCDC116	Brain_Frontal_Cortex_BA9	Brain	0.597784970738373	1151
EIF3CL	Nerve_Tibial	Nervous	0.596960553348101	1573
C5orf24	Whole_Blood	Blood	0.596854708877547	1948
CLN3	Stomach	Digestive	0.596841559760795	1259
RP11-493E12.1	Brain_Cerebellum	Brain	0.596443544214101	1654
RP11-129J12.2	Adipose_Visceral_Omentum	Adipose	0.595601370413241	2237
EIF3C	Artery_Tibial	Blood Vessel	0.594882254638771	1593
SULT1A1	Heart_Atrial_Appendage	Heart	0.593596878155897	1197
CREM	Whole_Blood	Blood	0.593354117153441	2069
AF127936.7	Pancreas	Digestive	0.59183468261248	1949
ICOSLG	Colon_Transverse	Digestive	0.591768750749731	3089
TUFM	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.591624559178188	1287
KB-1440D3.14	Artery_Tibial	Blood Vessel	0.59120127572158	1699
GPX1	Brain_Frontal_Cortex_BA9	Brain	0.588812340525492	1197
MST1	Breast_Mammary_Tissue	Breast	0.588435005837988	1322
SULT1A2	Colon_Sigmoid	Digestive	0.588291278870597	1086
SULT1A1	Pituitary	Endocrine	0.588072747417667	981
NPIPB7	Cells_Transformed_fibroblasts	Connective Tissue	0.587329412127599	1559
MST1	Brain_Caudate_basal_ganglia	Brain	0.586581063547506	1194
INPP5E	Cells_Transformed_fibroblasts	Connective Tissue	0.586357761530814	3212
INPP5E	Cells_Transformed_fibroblasts	Connective Tissue	0.585694739566664	3242
SLC22A5	Pancreas	Digestive	0.585552895178641	1817
BSN-AS2	Heart_Left_Ventricle	Heart	0.585328226583485	1332
ERBB2	Testis	Male Reproductive	0.584492495210743	1762
NPIPB7	Brain_Putamen_basal_ganglia	Brain	0.583162631707117	955
IP6K2	Colon_Transverse	Digestive	0.580884662373639	694
TUFM	Esophagus_Mucosa	Digestive	0.580051402295687	1388
TUFM	Brain_Caudate_basal_ganglia	Brain	0.578133609028235	1032
SNAP29	Artery_Tibial	Blood Vessel	0.576541799735171	1061
ATG16L1	Adrenal_Gland	Endocrine	0.575499983378547	2457
NPIPB7	Adipose_Visceral_Omentum	Adipose	0.575031027801471	1393
ATXN2L	Artery_Tibial	Blood Vessel	0.574510325751009	1593
EIF3CL	Brain_Hypothalamus	Brain	0.574472304088353	985
CCDC101	Muscle_Skeletal	Skeletal Muscle	0.574319149375394	1661
ATXN2L	Whole_Blood	Blood	0.573680411944282	1629
AC010733.5	Colon_Transverse	Digestive	0.573597607294098	1759
YDJC	Adrenal_Gland	Endocrine	0.573371591954599	1278