GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▼ | nSNPs |
|---|---|---|---|---|
| RP11-254B13.1 | Artery_Tibial | Blood Vessel | 0.631446869548174 | 2773 |
| AGER | Artery_Aorta | Blood Vessel | 0.629626907077087 | 19885 |
| AL133458.1 | Esophagus_Mucosa | Digestive | 0.629375855736374 | 3967 |
| TUFM | Colon_Transverse | Digestive | 0.629048808604495 | 1245 |
| TUFM | Cells_Transformed_fibroblasts | Connective Tissue | 0.628713879091396 | 1559 |
| PDE4A | Testis | Male Reproductive | 0.628161953153751 | 2487 |
| RNASET2 | Brain_Cerebellar_Hemisphere | Brain | 0.628148480560133 | 3212 |
| RP11-324I22.3 | Thyroid | Endocrine | 0.627836800463145 | 2007 |
| CDC37P1 | Adrenal_Gland | Endocrine | 0.626306445160546 | 1121 |
| KIF21B | Stomach | Digestive | 0.625827802608866 | 2814 |
| IL18RAP | Lung | Lung | 0.625672208357178 | 2803 |
| NFATC2IP | Artery_Tibial | Blood Vessel | 0.625139154590673 | 1593 |
| ATG16L1 | Brain_Frontal_Cortex_BA9 | Brain | 0.62367711408068 | 2287 |
| IL18RAP | Lung | Lung | 0.623235599059576 | 2994 |
| RP11-94L15.2 | Cells_EBV-transformed_lymphocytes | Blood | 0.622854286723118 | 1679 |
| EIF4E2 | Esophagus_Muscularis | Digestive | 0.622258796666728 | 2095 |
| RNASET2 | Nerve_Tibial | Nervous | 0.621629965993839 | 4157 |
| RNASET2 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.620978741965736 | 4291 |
| AL133458.1 | Cells_Transformed_fibroblasts | Connective Tissue | 0.620916255271482 | 4028 |
| RP11-168O16.2 | Artery_Tibial | Blood Vessel | 0.62090944287424 | 3157 |
| EIF3CL | Thyroid | Endocrine | 0.620822244669702 | 1585 |
| DLD | Brain_Hypothalamus | Brain | 0.620491516949124 | 1816 |
| QRICH1 | Whole_Blood | Blood | 0.620482619945841 | 1347 |
| ARFRP1 | Pituitary | Endocrine | 0.620076032951463 | 2904 |
| SH2B1 | Esophagus_Gastroesophageal_Junction | Digestive | 0.619856408762626 | 1103 |
| RAPGEFL1 | Brain_Cortex | Brain | 0.618602180694357 | 1517 |
| C1orf106 | Artery_Aorta | Blood Vessel | 0.618425770675533 | 2921 |
| EIF3CL | Cells_EBV-transformed_lymphocytes | Blood | 0.618051187545112 | 1104 |
| AL133458.1 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.61733267123723 | 4291 |
| EIF3CL | Adipose_Subcutaneous | Adipose | 0.615980772896143 | 1605 |
| SULT1A2 | Prostate | Male Reproductive | 0.615733115465829 | 977 |
| RP11-231C14.4 | Whole_Blood | Blood | 0.614930848793231 | 774 |
| DDX59 | Cells_Transformed_fibroblasts | Connective Tissue | 0.613859985845263 | 3132 |
| EIF3CL | Esophagus_Mucosa | Digestive | 0.6124116193869 | 1388 |
| IP6K2 | Whole_Blood | Blood | 0.612236568739567 | 787 |
| HLA-DQA2 | Adrenal_Gland | Endocrine | 0.612121879803041 | 18760 |
| PLA2G5 | Breast_Mammary_Tissue | Breast | 0.611673915436169 | 3025 |
| PLA2G5 | Breast_Mammary_Tissue | Breast | 0.611586007884889 | 3006 |
| RP11-22P6.2 | Ovary | Female Reproductive | 0.61149363700715 | 988 |
| ATP2A1 | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.610725202515133 | 1287 |
| STAT3 | Heart_Left_Ventricle | Heart | 0.610464763797087 | 1384 |
| GPSM1 | Adipose_Subcutaneous | Adipose | 0.609649686740222 | 3252 |
| SBK1 | Artery_Aorta | Blood Vessel | 0.609271055252803 | 1275 |
| RP11-1348G14.6 | Brain_Nucleus_accumbens_basal_ganglia | Brain | 0.608932655090384 | 1030 |
| GPSM1 | Adipose_Subcutaneous | Adipose | 0.608395696587763 | 3281 |
| NBR2 | Vagina | Female Reproductive | 0.607948490113117 | 802 |
| ZGLP1 | Thyroid | Endocrine | 0.607863867059517 | 2750 |
| RNASET2 | Cells_Transformed_fibroblasts | Connective Tissue | 0.607844706691839 | 4028 |
| APEH | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.607198229453408 | 1437 |
| H2AFY | Esophagus_Muscularis | Digestive | 0.606749231404026 | 1679 |