GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
ZNF300P1	Artery_Tibial	Blood Vessel	0.751661451733489	3116
RP11-973H7.1	Stomach	Digestive	0.75200880765411	2542
CCDC116	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.752587747026949	1563
CDC37P1	Small_Intestine_Terminal_Ileum	Digestive	0.752863171846042	949
PTRF	Skin_Sun_Exposed_Lower_leg	Epithelial	0.7530825907352	1585
ZNF300P1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.754281019201566	3111
RP11-1348G14.4	Prostate	Male Reproductive	0.755635546940744	977
CCDC116	Pancreas	Digestive	0.755795713998057	1436
ICAM5	Whole_Blood	Blood	0.756031276173871	2868
PDLIM4	Testis	Male Reproductive	0.756106525235384	1874
SULT1A1	Prostate	Male Reproductive	0.758619698000542	977
CDC37P1	Vagina	Female Reproductive	0.758777431610079	961
SULT1A2	Adrenal_Gland	Endocrine	0.759113877901212	1121
RP11-1348G14.4	Adipose_Subcutaneous	Adipose	0.759640283386705	1605
ZNF300	Testis	Male Reproductive	0.75986748440367	2800
CDC37P1	Artery_Tibial	Blood Vessel	0.760003912023624	1593
GPX1	Brain_Cerebellum	Brain	0.761428360520584	1206
RP11-1348G14.4	Artery_Aorta	Blood Vessel	0.761651503900523	1275
CAPN10	Breast_Mammary_Tissue	Breast	0.761713125719041	3742
CDC37P1	Cells_EBV-transformed_lymphocytes	Blood	0.762247270461923	1104
RNASET2	Pancreas	Digestive	0.762746186419719	3581
ZNF300P1	Esophagus_Gastroesophageal_Junction	Digestive	0.763515190341107	2577
MROH3P	Artery_Aorta	Blood Vessel	0.764117393200593	2921
IRF1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.764995174566611	2115
ZNF300P1	Nerve_Tibial	Nervous	0.765208787909352	3045
RP11-129J12.1	Colon_Transverse	Digestive	0.765546263402639	2216
RP11-1348G14.4	Artery_Tibial	Blood Vessel	0.766294213996525	1593
IRGM	Whole_Blood	Blood	0.766568727281409	3182
CDC37P1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.767031484192482	1582
CDC37P1	Lung	Lung	0.767145899198726	1572
CDC37P1	Adipose_Visceral_Omentum	Adipose	0.767206190089502	1393
SBK1	Artery_Tibial	Blood Vessel	0.767371649379215	1593
NPIPB7	Artery_Tibial	Blood Vessel	0.767974607452678	1593
EIF3CL	Heart_Left_Ventricle	Heart	0.768516862254855	1264
RHOA-IT1	Colon_Transverse	Digestive	0.768626137001233	1292
RP11-1348G14.4	Esophagus_Muscularis	Digestive	0.768679252943415	1333
RP11-431K24.1	Artery_Tibial	Blood Vessel	0.768745757493062	2794
IL18R1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.769435846464285	2830
IL18R1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.769615842412564	3006
SH2B1	Esophagus_Mucosa	Digestive	0.769648582150712	1388
SH2B1	Lung	Lung	0.769734972435177	1572
MST1	Nerve_Tibial	Nervous	0.769803093135282	1417
RP11-435I10.5	Ovary	Female Reproductive	0.770503523981693	988
RP11-1348G14.5	Breast_Mammary_Tissue	Breast	0.771646973483227	1297
SULT1A1	Breast_Mammary_Tissue	Breast	0.77273536496547	1297
NPIPB7	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.773190616991655	1287
ZNF300P1	Esophagus_Mucosa	Digestive	0.776030576252209	2990
SH2B1	Heart_Left_Ventricle	Heart	0.776354288469992	1264
SH2B1	Breast_Mammary_Tissue	Breast	0.778288638667833	1297
SH2B1	Nerve_Tibial	Nervous	0.77867423047761	1573