GTEx colocalization
202 colocalized genes · 688 comparisons
PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.
| Gene | Tissue | Tissue class | PP.H4 ▲ | nSNPs |
|---|---|---|---|---|
| TUFM | Artery_Coronary | Blood Vessel | 0.717586837322118 | 1108 |
| SULT1A1 | Muscle_Skeletal | Skeletal Muscle | 0.718190575871828 | 1661 |
| CDC37P1 | Colon_Sigmoid | Digestive | 0.719325486888518 | 1086 |
| AP001189.4 | Colon_Transverse | Digestive | 0.719722935124328 | 2776 |
| RP11-129J12.1 | Colon_Sigmoid | Digestive | 0.719911533451701 | 2067 |
| APOBR | Lung | Lung | 0.720830712893924 | 1572 |
| SDCCAG3 | Artery_Tibial | Blood Vessel | 0.721312010680675 | 3213 |
| CXCL14 | Spleen | Immune Organ | 0.721321109196706 | 1294 |
| SDCCAG3 | Artery_Tibial | Blood Vessel | 0.721474899875525 | 3234 |
| EIF3CL | Pancreas | Digestive | 0.721493779468233 | 1168 |
| EIF3CL | Whole_Blood | Blood | 0.722972338661046 | 1629 |
| RP11-387H17.4 | Adipose_Visceral_Omentum | Adipose | 0.723199790523347 | 1905 |
| RP11-1348G14.4 | Brain_Cerebellar_Hemisphere | Brain | 0.723375395869393 | 993 |
| GPX4 | Prostate | Male Reproductive | 0.724653593762906 | 2939 |
| ZNF300P1 | Muscle_Skeletal | Skeletal Muscle | 0.724702140938963 | 3233 |
| CAPN10 | Artery_Tibial | Blood Vessel | 0.724980930654322 | 4028 |
| IP6K2 | Artery_Aorta | Blood Vessel | 0.725496510737344 | 1043 |
| GPX1 | Heart_Atrial_Appendage | Heart | 0.72590366387557 | 1310 |
| MAPKAPK3 | Thyroid | Endocrine | 0.726025630646915 | 844 |
| ATP2A1 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.726674023554689 | 1582 |
| CREM | Cells_EBV-transformed_lymphocytes | Blood | 0.726674866486032 | 1718 |
| CDC37P1 | Adipose_Subcutaneous | Adipose | 0.730411211398563 | 1605 |
| NPIPB7 | Brain_Frontal_Cortex_BA9 | Brain | 0.730721273575757 | 988 |
| NFATC2IP | Testis | Male Reproductive | 0.731164391122702 | 1412 |
| INPP5E | Brain_Hippocampus | Brain | 0.731251079692726 | 2278 |
| RP11-1348G14.6 | Skin_Sun_Exposed_Lower_leg | Epithelial | 0.731634788416047 | 1582 |
| INPP5E | Brain_Hippocampus | Brain | 0.73168924421504 | 2218 |
| RNASET2 | Lung | Lung | 0.731826612567359 | 4049 |
| NFATC2IP | Skin_Not_Sun_Exposed_Suprapubic | Epithelial | 0.732084683868488 | 1287 |
| NPIPB6 | Colon_Transverse | Digestive | 0.733842809778044 | 1245 |
| ZNF300P1 | Stomach | Digestive | 0.733991312619173 | 2870 |
| OTUD3 | Colon_Sigmoid | Digestive | 0.73513321678421 | 2744 |
| ZNF300P1 | Breast_Mammary_Tissue | Breast | 0.736162574243971 | 2869 |
| PLA2G2A | Thyroid | Endocrine | 0.736195857182426 | 3253 |
| PLA2G2A | Thyroid | Endocrine | 0.736300005167485 | 3230 |
| RP11-1348G14.6 | Nerve_Tibial | Nervous | 0.736380879744252 | 1573 |
| GPSM1 | Muscle_Skeletal | Skeletal Muscle | 0.737118456459033 | 3413 |
| GPSM1 | Muscle_Skeletal | Skeletal Muscle | 0.737308177709221 | 3373 |
| OTUD3 | Colon_Sigmoid | Digestive | 0.737341793283019 | 2723 |
| NFATC2IP | Cells_Transformed_fibroblasts | Connective Tissue | 0.738441627312418 | 1559 |
| SBK1 | Colon_Transverse | Digestive | 0.740138459472122 | 1245 |
| GPX4 | Pancreas | Digestive | 0.740591149513293 | 3445 |
| GSDMA | Cells_EBV-transformed_lymphocytes | Blood | 0.742746909700464 | 1679 |
| ZNF300 | Artery_Tibial | Blood Vessel | 0.743568160812563 | 3116 |
| EIF3C | Heart_Left_Ventricle | Heart | 0.743653926485108 | 1264 |
| ITGB2-AS1 | Heart_Left_Ventricle | Heart | 0.743935739771053 | 2322 |
| RP11-1348G14.4 | Esophagus_Mucosa | Digestive | 0.747314145701238 | 1388 |
| TUFM | Brain_Hippocampus | Brain | 0.747990148867159 | 959 |
| RP11-1348G14.6 | Esophagus_Muscularis | Digestive | 0.748514112641685 | 1333 |
| ZNF300P1 | Artery_Aorta | Blood Vessel | 0.750568371904364 | 2879 |