GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
PLA2G5	Breast_Mammary_Tissue	Breast	0.611586007884889	3006
PLA2G5	Breast_Mammary_Tissue	Breast	0.611673915436169	3025
HLA-DQA2	Adrenal_Gland	Endocrine	0.612121879803041	18760
IP6K2	Whole_Blood	Blood	0.612236568739567	787
EIF3CL	Esophagus_Mucosa	Digestive	0.6124116193869	1388
DDX59	Cells_Transformed_fibroblasts	Connective Tissue	0.613859985845263	3132
RP11-231C14.4	Whole_Blood	Blood	0.614930848793231	774
SULT1A2	Prostate	Male Reproductive	0.615733115465829	977
EIF3CL	Adipose_Subcutaneous	Adipose	0.615980772896143	1605
AL133458.1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.61733267123723	4291
EIF3CL	Cells_EBV-transformed_lymphocytes	Blood	0.618051187545112	1104
C1orf106	Artery_Aorta	Blood Vessel	0.618425770675533	2921
RAPGEFL1	Brain_Cortex	Brain	0.618602180694357	1517
SH2B1	Esophagus_Gastroesophageal_Junction	Digestive	0.619856408762626	1103
ARFRP1	Pituitary	Endocrine	0.620076032951463	2904
QRICH1	Whole_Blood	Blood	0.620482619945841	1347
DLD	Brain_Hypothalamus	Brain	0.620491516949124	1816
EIF3CL	Thyroid	Endocrine	0.620822244669702	1585
RP11-168O16.2	Artery_Tibial	Blood Vessel	0.62090944287424	3157
AL133458.1	Cells_Transformed_fibroblasts	Connective Tissue	0.620916255271482	4028
RNASET2	Skin_Sun_Exposed_Lower_leg	Epithelial	0.620978741965736	4291
RNASET2	Nerve_Tibial	Nervous	0.621629965993839	4157
EIF4E2	Esophagus_Muscularis	Digestive	0.622258796666728	2095
RP11-94L15.2	Cells_EBV-transformed_lymphocytes	Blood	0.622854286723118	1679
IL18RAP	Lung	Lung	0.623235599059576	2994
ATG16L1	Brain_Frontal_Cortex_BA9	Brain	0.62367711408068	2287
NFATC2IP	Artery_Tibial	Blood Vessel	0.625139154590673	1593
IL18RAP	Lung	Lung	0.625672208357178	2803
KIF21B	Stomach	Digestive	0.625827802608866	2814
CDC37P1	Adrenal_Gland	Endocrine	0.626306445160546	1121
RP11-324I22.3	Thyroid	Endocrine	0.627836800463145	2007
RNASET2	Brain_Cerebellar_Hemisphere	Brain	0.628148480560133	3212
PDE4A	Testis	Male Reproductive	0.628161953153751	2487
TUFM	Cells_Transformed_fibroblasts	Connective Tissue	0.628713879091396	1559
TUFM	Colon_Transverse	Digestive	0.629048808604495	1245
AL133458.1	Esophagus_Mucosa	Digestive	0.629375855736374	3967
AGER	Artery_Aorta	Blood Vessel	0.629626907077087	19885
RP11-254B13.1	Artery_Tibial	Blood Vessel	0.631446869548174	2773
NFATC2IP	Colon_Transverse	Digestive	0.63187322121231	1245
NPIPB6	Thyroid	Endocrine	0.633369535221963	1585
ETS2	Nerve_Tibial	Nervous	0.637195815013095	3391
SULT1A2	Brain_Putamen_basal_ganglia	Brain	0.6400551048309	955
IP6K2	Testis	Male Reproductive	0.640296549360821	683
SULT1A1	Brain_Cortex	Brain	0.640645739120207	1010
EIF3C	Cells_EBV-transformed_lymphocytes	Blood	0.642344863721013	1104
RP1-167A14.2	Whole_Blood	Blood	0.643880859251917	4154
SULT1A1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.64398362074588	1287
CCR6	Esophagus_Mucosa	Digestive	0.649359519645171	3967
AAGAB	Thyroid	Endocrine	0.650567041530162	2698
MST1	Esophagus_Mucosa	Digestive	0.652065555101693	1384