GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
NPIPB7	Brain_Putamen_basal_ganglia	Brain	0.583162631707117	955
ERBB2	Testis	Male Reproductive	0.584492495210743	1762
BSN-AS2	Heart_Left_Ventricle	Heart	0.585328226583485	1332
SLC22A5	Pancreas	Digestive	0.585552895178641	1817
INPP5E	Cells_Transformed_fibroblasts	Connective Tissue	0.585694739566664	3242
INPP5E	Cells_Transformed_fibroblasts	Connective Tissue	0.586357761530814	3212
MST1	Brain_Caudate_basal_ganglia	Brain	0.586581063547506	1194
NPIPB7	Cells_Transformed_fibroblasts	Connective Tissue	0.587329412127599	1559
SULT1A1	Pituitary	Endocrine	0.588072747417667	981
SULT1A2	Colon_Sigmoid	Digestive	0.588291278870597	1086
MST1	Breast_Mammary_Tissue	Breast	0.588435005837988	1322
GPX1	Brain_Frontal_Cortex_BA9	Brain	0.588812340525492	1197
KB-1440D3.14	Artery_Tibial	Blood Vessel	0.59120127572158	1699
TUFM	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.591624559178188	1287
ICOSLG	Colon_Transverse	Digestive	0.591768750749731	3089
AF127936.7	Pancreas	Digestive	0.59183468261248	1949
CREM	Whole_Blood	Blood	0.593354117153441	2069
SULT1A1	Heart_Atrial_Appendage	Heart	0.593596878155897	1197
EIF3C	Artery_Tibial	Blood Vessel	0.594882254638771	1593
RP11-129J12.2	Adipose_Visceral_Omentum	Adipose	0.595601370413241	2237
RP11-493E12.1	Brain_Cerebellum	Brain	0.596443544214101	1654
CLN3	Stomach	Digestive	0.596841559760795	1259
C5orf24	Whole_Blood	Blood	0.596854708877547	1948
EIF3CL	Nerve_Tibial	Nervous	0.596960553348101	1573
CCDC116	Brain_Frontal_Cortex_BA9	Brain	0.597784970738373	1151
LEAP2	Artery_Aorta	Blood Vessel	0.598769363995915	1903
EIF3CL	Artery_Tibial	Blood Vessel	0.599467745098822	1593
PDE4A	Cells_Transformed_fibroblasts	Connective Tissue	0.600270433917412	2739
TMCO4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.60044797749892	3315
TUFM	Cells_EBV-transformed_lymphocytes	Blood	0.600524343971742	1104
RP11-435I10.5	Pituitary	Endocrine	0.600863998207289	981
PPP1R1B	Heart_Atrial_Appendage	Heart	0.600986880082395	1818
TMCO4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.601098285917186	3296
RNASET2	Stomach	Digestive	0.601119967873081	3715
PARD3-AS1	Artery_Aorta	Blood Vessel	0.602972463560797	1875
RNF123	Heart_Atrial_Appendage	Heart	0.603178245075752	1310
SLC25A48	Brain_Cerebellar_Hemisphere	Brain	0.60403164752056	1138
NPIPB7	Brain_Cerebellar_Hemisphere	Brain	0.60633513732704	993
H2AFY	Esophagus_Muscularis	Digestive	0.606749231404026	1679
APEH	Skin_Sun_Exposed_Lower_leg	Epithelial	0.607198229453408	1437
RNASET2	Cells_Transformed_fibroblasts	Connective Tissue	0.607844706691839	4028
ZGLP1	Thyroid	Endocrine	0.607863867059517	2750
NBR2	Vagina	Female Reproductive	0.607948490113117	802
GPSM1	Adipose_Subcutaneous	Adipose	0.608395696587763	3281
RP11-1348G14.6	Brain_Nucleus_accumbens_basal_ganglia	Brain	0.608932655090384	1030
SBK1	Artery_Aorta	Blood Vessel	0.609271055252803	1275
GPSM1	Adipose_Subcutaneous	Adipose	0.609649686740222	3252
STAT3	Heart_Left_Ventricle	Heart	0.610464763797087	1384
ATP2A1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.610725202515133	1287
RP11-22P6.2	Ovary	Female Reproductive	0.61149363700715	988