GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
SNAPC4	Whole_Blood	Blood	0.554933204945266	3327
AC063976.7	Ovary	Female Reproductive	0.555082634813254	1582
MST1	Adipose_Visceral_Omentum	Adipose	0.556290391131765	1335
EIF3C	Esophagus_Muscularis	Digestive	0.556409290402266	1333
C6orf3	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.556870176249449	2237
TMEM89	Cells_Transformed_fibroblasts	Connective Tissue	0.556911911412339	1163
TMCO4	Nerve_Tibial	Nervous	0.556930640803898	3197
TMCO4	Nerve_Tibial	Nervous	0.557190086985955	3176
TUFM	Spleen	Immune Organ	0.557874666108354	999
MTND5P11	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.558547120937076	1637
TUFM	Whole_Blood	Blood	0.558777136004523	1629
EIF3CL	Lung	Lung	0.558907644674544	1572
TUFM	Lung	Lung	0.559683357322869	1572
SEC31B	Heart_Left_Ventricle	Heart	0.560599323313194	1200
TUFM	Artery_Tibial	Blood Vessel	0.563145812528513	1593
ORMDL3	Skin_Sun_Exposed_Lower_leg	Epithelial	0.563490296476516	2114
RP11-1348G14.4	Small_Intestine_Terminal_Ileum	Digestive	0.564761193668336	949
CCDC116	Colon_Transverse	Digestive	0.565709867576036	1489
MST1R	Esophagus_Muscularis	Digestive	0.565970966335705	1348
TUFM	Nerve_Tibial	Nervous	0.567330973764581	1573
RP11-1348G14.4	Artery_Coronary	Blood Vessel	0.567504168970267	1108
IL27	Whole_Blood	Blood	0.567527345544609	1629
ATG16L1	Brain_Cerebellar_Hemisphere	Brain	0.567978026666457	2234
IRGM	Adipose_Subcutaneous	Adipose	0.567985139572444	3140
RP5-837J1.4	Breast_Mammary_Tissue	Breast	0.568209067455447	2206
EIF3C	Skin_Sun_Exposed_Lower_leg	Epithelial	0.570072070865615	1582
RP11-22P6.2	Brain_Cerebellum	Brain	0.570111638370363	1032
GPX1	Testis	Male Reproductive	0.57012666941077	1289
SH2B1	Stomach	Digestive	0.571337279020585	1259
ZNF300P1	Heart_Atrial_Appendage	Heart	0.571470744714086	2788
APEH	Adipose_Visceral_Omentum	Adipose	0.571690957450622	1335
MON1A	Artery_Tibial	Blood Vessel	0.571757623869131	1425
TMCO4	Adrenal_Gland	Endocrine	0.572059032828591	2751
TMCO4	Adrenal_Gland	Endocrine	0.572275181085554	2752
CAPN10	Nerve_Tibial	Nervous	0.572591716048115	3982
SULT1A2	Brain_Caudate_basal_ganglia	Brain	0.572974751737153	1032
P4HA2	Ovary	Female Reproductive	0.573128074353138	1582
RP11-672A2.6	Thyroid	Endocrine	0.573162587720462	2993
YDJC	Adrenal_Gland	Endocrine	0.573371591954599	1278
AC010733.5	Colon_Transverse	Digestive	0.573597607294098	1759
ATXN2L	Whole_Blood	Blood	0.573680411944282	1629
CCDC101	Muscle_Skeletal	Skeletal Muscle	0.574319149375394	1661
EIF3CL	Brain_Hypothalamus	Brain	0.574472304088353	985
ATXN2L	Artery_Tibial	Blood Vessel	0.574510325751009	1593
NPIPB7	Adipose_Visceral_Omentum	Adipose	0.575031027801471	1393
ATG16L1	Adrenal_Gland	Endocrine	0.575499983378547	2457
SNAP29	Artery_Tibial	Blood Vessel	0.576541799735171	1061
TUFM	Brain_Caudate_basal_ganglia	Brain	0.578133609028235	1032
TUFM	Esophagus_Mucosa	Digestive	0.580051402295687	1388
IP6K2	Colon_Transverse	Digestive	0.580884662373639	694