GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
HLA-DQA2	Small_Intestine_Terminal_Ileum	Digestive	0.523493942604044	17209
INPP5E	Pituitary	Endocrine	0.523578144412965	2330
EIF3C	Adipose_Subcutaneous	Adipose	0.523655012170803	1605
INPP5E	Pituitary	Endocrine	0.523810457618483	2275
SULT1A1	Brain_Frontal_Cortex_BA9	Brain	0.52479079624199	988
DLD	Artery_Aorta	Blood Vessel	0.526272695267714	2305
CTC-276P9.3	Testis	Male Reproductive	0.5267871272382	1531
SULT1A1	Brain_Caudate_basal_ganglia	Brain	0.527397730961766	1032
RNF123	Brain_Frontal_Cortex_BA9	Brain	0.527516934738137	1197
RP11-973H7.1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.527592315205731	2654
ARHGAP30	Colon_Transverse	Digestive	0.528498337540566	2549
ORM1	Artery_Aorta	Blood Vessel	0.530822440563182	2818
ORM1	Artery_Aorta	Blood Vessel	0.532359618763777	2726
CCDC101	Artery_Tibial	Blood Vessel	0.533430396769453	1593
SULT1A1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.533961941888976	1582
NPIPB7	Brain_Cortex	Brain	0.534835982654369	1010
PKD2L1	Artery_Aorta	Blood Vessel	0.534903785307708	1689
SULT1A1	Esophagus_Muscularis	Digestive	0.535210403362481	1333
GPR25	Whole_Blood	Blood	0.53526355565954	3221
RP11-64C12.6	Adipose_Subcutaneous	Adipose	0.535353299646678	2649
NPIPB6	Brain_Cerebellar_Hemisphere	Brain	0.536416675649753	993
RP11-1348G14.6	Artery_Aorta	Blood Vessel	0.537494071654168	1275
SULT1A2	Brain_Anterior_cingulate_cortex_BA24	Brain	0.53783014589536	931
DAG1	Cells_Transformed_fibroblasts	Connective Tissue	0.537965730638067	1403
GPX4	Artery_Tibial	Blood Vessel	0.538625905472428	4035
SULT1A2	Pancreas	Digestive	0.540057253985669	1168
RP11-1348G14.6	Breast_Mammary_Tissue	Breast	0.541511436015895	1297
HLA-DQA2	Colon_Sigmoid	Digestive	0.541651024499149	18479
LIME1	Testis	Male Reproductive	0.542568987265833	3583
TMEM184B	Colon_Transverse	Digestive	0.546789454431932	1574
TUFM	Adipose_Subcutaneous	Adipose	0.546874938845105	1605
TUFM	Adipose_Visceral_Omentum	Adipose	0.548032940453878	1393
ERBB2	Heart_Atrial_Appendage	Heart	0.548090577823181	1818
WDR6	Brain_Cortex	Brain	0.548180748471058	837
TNFRSF6B	Artery_Tibial	Blood Vessel	0.54828861152527	3962
SULT1A2	Brain_Nucleus_accumbens_basal_ganglia	Brain	0.548351443247106	1030
PTPN2	Whole_Blood	Blood	0.548577408013884	2919
RHOA	Artery_Tibial	Blood Vessel	0.548595215688056	747
ZNF121	Lung	Lung	0.548928613428553	2095
TUFM	Thyroid	Endocrine	0.549053035190928	1585
EIF3C	Artery_Aorta	Blood Vessel	0.549624520718497	1275
ATG16L1	Brain_Caudate_basal_ganglia	Brain	0.550046129623681	2343
SULT1A2	Pituitary	Endocrine	0.552077529132906	981
TUFM	Skin_Sun_Exposed_Lower_leg	Epithelial	0.552145368682823	1582
NAV1	Spleen	Immune Organ	0.55231718075785	2009
RP11-146I2.1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.552412907890119	2717
RP11-22P6.2	Lung	Lung	0.5529238556631	1572
SULT1A2	Brain_Cortex	Brain	0.553434768210059	1010
PARK7	Esophagus_Muscularis	Digestive	0.554062540855199	2658
SNAPC4	Whole_Blood	Blood	0.554917967664138	3317