GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
CARD9	Lung	Lung	0.906660951482629	3213
CDC37P1	Colon_Transverse	Digestive	0.906839710571331	1245
CDC37P1	Testis	Male Reproductive	0.908456168490468	1412
NPIPB7	Whole_Blood	Blood	0.908706323358786	1629
SLC22A5	Spleen	Immune Organ	0.910592720080083	1584
RP11-973H7.1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.913160272227422	2862
DOCK3	Skin_Sun_Exposed_Lower_leg	Epithelial	0.913868881422502	770
RP11-1348G14.4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.915053779803222	1582
SULT1A2	Esophagus_Mucosa	Digestive	0.915791555389193	1388
ATG16L1	Lung	Lung	0.916038922971675	2876
NICN1	Esophagus_Muscularis	Digestive	0.916556369806848	1348
IP6K2	Artery_Tibial	Blood Vessel	0.917584942284176	1167
TRPM2	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.917748788719363	3158
MST1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.918132522127379	1331
RP11-129J12.1	Spleen	Immune Organ	0.918293463442542	1972
SULT1A2	Adipose_Visceral_Omentum	Adipose	0.919166607814734	1393
NUPR1	Artery_Tibial	Blood Vessel	0.919918310610297	1593
APEH	Cells_Transformed_fibroblasts	Connective Tissue	0.920747219855813	1403
CCDC116	Esophagus_Mucosa	Digestive	0.922599948827391	1636
SULT1A2	Skin_Sun_Exposed_Lower_leg	Epithelial	0.925733877518201	1582
ATG16L1	Nerve_Tibial	Nervous	0.927894170404804	2877
AJ006998.2	Adipose_Subcutaneous	Adipose	0.928929281033577	2297
SULT1A2	Breast_Mammary_Tissue	Breast	0.929586954056795	1297
IL5	Muscle_Skeletal	Skeletal Muscle	0.930007107403804	2168
UBE2L3	Whole_Blood	Blood	0.931709250366564	1766
APEH	Esophagus_Mucosa	Digestive	0.932173088158953	1384
CDC37P1	Artery_Coronary	Blood Vessel	0.93303612186197	1108
PARK7	Whole_Blood	Blood	0.936827121902505	2844
SULT1A2	Artery_Tibial	Blood Vessel	0.937325346102949	1593
SLC22A5	Breast_Mammary_Tissue	Breast	0.939103825418163	1938
RP11-435I10.5	Testis	Male Reproductive	0.93972621079047	1412
STAT3	Muscle_Skeletal	Skeletal Muscle	0.939920617526645	1649
ATG16L1	Testis	Male Reproductive	0.940092000032781	2580
RP11-129J12.2	Colon_Transverse	Digestive	0.940126208373274	2216
CARD9	Cells_Transformed_fibroblasts	Connective Tissue	0.940483578854621	3242
CARD9	Cells_Transformed_fibroblasts	Connective Tissue	0.940504826477948	3212
NPIPB7	Skin_Sun_Exposed_Lower_leg	Epithelial	0.941404232969683	1582
SULT1A2	Artery_Aorta	Blood Vessel	0.941510538296381	1275
PDLIM4	Skin_Sun_Exposed_Lower_leg	Epithelial	0.941752866578175	2115
NPIPB6	Testis	Male Reproductive	0.942570104055778	1412
SULT1A2	Adipose_Subcutaneous	Adipose	0.94301700052023	1605
SLC26A6	Muscle_Skeletal	Skeletal Muscle	0.943754728245921	1229
RP11-973H7.1	Colon_Sigmoid	Digestive	0.944870856985927	2375
SULT1A2	Esophagus_Muscularis	Digestive	0.945534697423919	1333
GPSM1	Thyroid	Endocrine	0.946066250329341	3248
GPSM1	Thyroid	Endocrine	0.946212497510959	3225
CDC37P1	Thyroid	Endocrine	0.947645337399278	1585
ATG16L1	Brain_Cerebellum	Brain	0.948244824777047	2341
ATG16L1	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.95046200982443	2740
RPL37	Nerve_Tibial	Nervous	0.952392141575525	3188