GTEx colocalization

202 colocalized genes · 688 comparisons

PP.H4 is the posterior probability that the GWAS and eQTL signals share one causal variant. Rows are tissue–gene comparisons with PP.H4 ≥ 0.5.

Gene	Tissue	Tissue class	PP.H4 ▲	nSNPs
SH2B1	Esophagus_Muscularis	Digestive	0.779316167323819	1333
TUFM	Brain_Putamen_basal_ganglia	Brain	0.779419617501208	955
TUFM	Testis	Male Reproductive	0.780068036340554	1412
ZNF300P1	Colon_Sigmoid	Digestive	0.78039052395093	2609
ZNF300P1	Liver	Liver	0.781703662500868	2391
TUFM	Brain_Nucleus_accumbens_basal_ganglia	Brain	0.782335279423874	1030
RP11-22P6.3	Muscle_Skeletal	Skeletal Muscle	0.782894942413419	1661
RP11-1348G14.4	Breast_Mammary_Tissue	Breast	0.782964552830085	1297
CCDC36	Testis	Male Reproductive	0.783640979414563	898
SULT1A1	Pancreas	Digestive	0.784365917119685	1168
IL18RAP	Whole_Blood	Blood	0.784490454886813	2880
IL18RAP	Whole_Blood	Blood	0.784620112920594	3070
RN7SL47P	Lung	Lung	0.785257413162415	2854
GRB7	Thyroid	Endocrine	0.785937963777422	2073
ORMDL3	Breast_Mammary_Tissue	Breast	0.785969098658265	1912
NPIPB7	Adipose_Subcutaneous	Adipose	0.78679492345835	1605
ZNF300	Esophagus_Muscularis	Digestive	0.787987202482847	2959
RP11-1348G14.4	Lung	Lung	0.788880984289435	1572
RP11-1348G14.6	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.789212790628126	1287
TMED1	Whole_Blood	Blood	0.790075252920561	2868
CDC37P1	Ovary	Female Reproductive	0.791691436993658	988
FGFR1OP	Skin_Not_Sun_Exposed_Suprapubic	Epithelial	0.79178345902034	3760
IP6K2	Adipose_Subcutaneous	Adipose	0.791961481834597	771
PMPCA	Liver	Liver	0.792038858540086	2308
PMPCA	Liver	Liver	0.793326439051143	2370
CAPN10	Stomach	Digestive	0.794257399141825	3704
RP11-435I10.5	Brain_Cerebellum	Brain	0.795334275295553	1032
IL18R1	Lung	Lung	0.796395090928203	2803
IL18R1	Lung	Lung	0.796615393534288	2994
ZNF300P1	Lung	Lung	0.798591266780213	3062
AL133458.1	Whole_Blood	Blood	0.798799128865312	4154
TUFM	Artery_Aorta	Blood Vessel	0.801855535759703	1275
NPIPB7	Testis	Male Reproductive	0.80323230200382	1412
MST1	Skin_Sun_Exposed_Lower_leg	Epithelial	0.804293070532119	1437
AJ006998.2	Muscle_Skeletal	Skeletal Muscle	0.804530173033824	2420
CDC37P1	Pancreas	Digestive	0.806321337788499	1168
ZNF300P1	Adipose_Visceral_Omentum	Adipose	0.807224633243597	2848
DAG1	Esophagus_Muscularis	Digestive	0.807579503528008	1348
SULT1A2	Spleen	Immune Organ	0.808167969879822	999
ZNF300P1	Adipose_Subcutaneous	Adipose	0.809292731220135	3140
AL133458.1	Lung	Lung	0.809585367102847	4049
SH2B1	Adipose_Subcutaneous	Adipose	0.810261277607357	1605
NUPR1	Esophagus_Muscularis	Digestive	0.810310352777193	1333
DOCK3	Heart_Atrial_Appendage	Heart	0.810413005363855	713
SH2B1	Whole_Blood	Blood	0.810497462895878	1629
NUPR1	Artery_Aorta	Blood Vessel	0.810561528986284	1275
RP11-1348G14.4	Thyroid	Endocrine	0.810628928615703	1585
ATG16L1	Heart_Atrial_Appendage	Heart	0.810654478617975	2578
ZNF300P1	Heart_Left_Ventricle	Heart	0.812542721736603	2905
RP11-1348G14.6	Adipose_Subcutaneous	Adipose	0.813561758638974	1605